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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68971867_68971972_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
68971867 - 68971972
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CGTCCCCGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCCTT
U12 Branch Point Sequence:
CTTCCCTTCCCT
Flanking Amino Acid:
VQALLGKGAKVALLDRNLEA
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
28.6
-1.3
4.2
66.4
42.2
Major PPT
58.6
0.19
1.1
53.8
36.6
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
43.9
-0.3
3.6
77.02
45.4

Associated Gene:

Gene:
HPGD
Ensembl Gene ID:
ENSAPLG00000002860
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002918
68945805 - 68972065
26261