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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69037786_69040102_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
69037786 - 69040102
Intron Length:
2317

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
AAG|GTATTCATC
5'SS Class:
major
3'SS Sequence:
CTCCCCTTTTTAA|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTAGCCCTGATT
Flanking Amino Acid:
APKSPDEMRKG*
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
70.7
39.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
43.5
-0.3
3.1
68.8
31.6
Minor 5ss
50.5
0.02
2.4
69.4
41.3
Minor BPS
56.8
0.3
1.8
76.55
40.3

Associated Gene:

Gene:
GLRA3
Ensembl Gene ID:
ENSAPLG00000002786
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047749
69037780 - 69126058
88279