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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69044288_69050366_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
69044288 - 69050366
Intron Length:
6079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGATGAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGGTCAACC
Flanking Amino Acid:
RFRRKRKKNKYFEGVLDGNE
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
59.4
0.21
1.2
60.8
43.4
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
49.3
-0
2.6
74.56
42.5

Associated Gene:

Gene:
GLRA3
Ensembl Gene ID:
ENSAPLG00000002786
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047749
69037780 - 69126058
88279