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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69050514_69052150_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69050514 - 69052150
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTAACATATTT
Flanking Amino Acid:
SSGSRASLPKVSYVKAIDIW
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.4
0.64
0.7
73.8
30.6
Minor 5ss
33.7
-1.9
3
42
44.7
Minor BPS
48.4
-0
2
75
41.5

Associated Gene:

Gene:
GLRA3
Ensembl Gene ID:
ENSAPLG00000002786
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047749
69037780 - 69126058
88279
ENSAPLT00000030666
69039974 - 69126058
86085
ENSAPLT00000002840
69039974 - 69126058
86085