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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69077612_69080185_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69077612 - 69080185
Intron Length:
2574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
FKNGNVLYSIRLTLILSCPM
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
GLRA3
Ensembl Gene ID:
ENSAPLG00000002786
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047749
69037780 - 69126058
88279
ENSAPLT00000030666
69039974 - 69126058
86085
ENSAPLT00000002840
69039974 - 69126058
86085