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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69094384_69098934_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69094384 - 69098934
Intron Length:
4551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATGAACT
Flanking Amino Acid:
SFGSIAETTMDSEPRSWSQE
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.9
0.56
0.9
66.6
39.7
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
69.1
0.68
1.7
87.75
36.6

Associated Gene:

Gene:
GLRA3
Ensembl Gene ID:
ENSAPLG00000002786
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030666
69039974 - 69126058
86085