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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69099003_69104073_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69099003 - 69104073
Intron Length:
5071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GGTGTTTTATTT
Flanking Amino Acid:
YDARIRPNFKGPPVNVTCNI
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
49.2
0.02
1.6
64.27
41

Associated Gene:

Gene:
GLRA3
Ensembl Gene ID:
ENSAPLG00000002786
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047749
69037780 - 69126058
88279
ENSAPLT00000030666
69039974 - 69126058
86085
ENSAPLT00000002840
69039974 - 69126058
86085