About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69104202_69125987_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69104202 - 69125987
Intron Length:
21786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGGTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTGCTTTGTTT
Flanking Amino Acid:
FYLWEAAVLLSLVATKETDS
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
70.7
0.47
0.9
68.4
37.4
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
45
-0.3
3.5
78.01
39.5

Associated Gene:

Gene:
GLRA3
Ensembl Gene ID:
ENSAPLG00000002786
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047749
69037780 - 69126058
88279
ENSAPLT00000030666
69039974 - 69126058
86085
ENSAPLT00000002840
69039974 - 69126058
86085