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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69233906_69247713_F

Intron Information:

Intron Rank:
127889
Intron Class:
major
Intron Phase:
Intron Coordinates:
69233906 - 69247713
Intron Length:
13808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTGTATTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.3
30.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
37.7
-1.4
3
46.2
49.1
Minor BPS
58.6
0.27
1.8
71.81
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018931
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020420
69233140 - 69277611
44472