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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69308321_69310021_R

Intron Information:

Intron Rank:
129726
Intron Class:
major
Intron Phase:
Intron Coordinates:
69308321 - 69310021
Intron Length:
1701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGACTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
71.1
0.47
0.9
62.7
38.5
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
94.4
1.48
0.6
103.7
17.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016972
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039078
69308108 - 69310315
2208