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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69333372_69338135_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69333372 - 69338135
Intron Length:
4764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAC
U12 Branch Point Sequence:
TGGTGCCTAACT
Flanking Amino Acid:
KSAEGVNSWLGSIISWSCLP
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
35.1
Major BPS
62.6
0.31
1.2
55.1
41.7
Major PPT
82.2
0.73
0.8
76
32
Minor 5ss
33.3
-1.9
2.9
35.7
40.8
Minor BPS
55.8
0.26
2.1
77.54
44.5

Associated Gene:

Gene:
GPM6A
Ensembl Gene ID:
ENSAPLG00000002472
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021886
69331659 - 69439700
108042