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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69338294_69343543_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69338294 - 69343543
Intron Length:
5250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGGTTATTATCC
Flanking Amino Acid:
AGAGAAVIAMFSSPFIWRGL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.9
36.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.4
0.64
0.7
72.4
25.9
Minor 5ss
48.6
-0.1
2.8
64.8
41.1
Minor BPS
50.7
0
1.9
63.85
41.6

Associated Gene:

Gene:
GPM6A
Ensembl Gene ID:
ENSAPLG00000002472
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021886
69331659 - 69439700
108042