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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69344900_69346431_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69344900 - 69346431
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGCA
5'SS Class:
major
3'SS Sequence:
TATTCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCTAT
U12 Branch Point Sequence:
ATGCCGTGAATA
Flanking Amino Acid:
ANLCLDLRQYGIVTIGEEKK
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
67.9
37.3
Major BPS
66
0.4
1.3
64.8
42.4
Major PPT
78.8
0.65
0.9
70
41.1
Minor 5ss
32
-2.1
3.3
38.4
41.8
Minor BPS
47.3
-0.2
2.1
60.14
39.9

Associated Gene:

Gene:
GPM6A
Ensembl Gene ID:
ENSAPLG00000002472
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021886
69331659 - 69439700
108042
ENSAPLT00000002517
69333219 - 69457369
124151
ENSAPLT00000038039
69333219 - 69379959
46741
ENSAPLT00000024685
69333219 - 69486647
153429