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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69371896_69484984_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69371896 - 69484984
Intron Length:
113089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCACTG
5'SS Class:
major
3'SS Sequence:
TCTTTTCATGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATATGTTAACG
Flanking Amino Acid:
LLICGDGVWQGCFECCIKCL
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
59
45.6
Major BPS
100
1.24
0.5
100
0
Major PPT
81.2
0.7
0.8
78
29.7
Minor 5ss
47.2
-0.3
2.9
65.1
46.1
Minor BPS
49.9
-0.1
2.1
59.42
42.1

Associated Gene:

Gene:
GPM6A
Ensembl Gene ID:
ENSAPLG00000002472
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024685
69333219 - 69486647
153429