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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69559143_69560924_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69559143 - 69560924
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCAA
5'SS Class:
major
3'SS Sequence:
CTGTATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTACCTGTATG
Flanking Amino Acid:
KVVAKLDNTKGIPASLSWCW
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
67.2
39.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.3
0.59
1
72.8
41.9
Minor 5ss
32.5
-2
3
41.4
44.9
Minor BPS
52.4
-0
1.9
65.2
42.4

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028221
69553518 - 69592141
38624
ENSAPLT00000027501
69544468 - 69594532
50065
ENSAPLT00000006398
69544433 - 69594532
50100
ENSAPLT00000036503
69543700 - 69594532
50833