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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69565391_69566027_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69565391 - 69566027
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
SSAPGMFITGDSQVGVLRIW
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.1
0.68
0.8
74.5
34
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028221
69553518 - 69592141
38624
ENSAPLT00000027501
69544468 - 69594532
50065
ENSAPLT00000006398
69544433 - 69594532
50100
ENSAPLT00000036503
69543700 - 69594532
50833