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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69571108_69571807_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69571108 - 69571807
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGATTGGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTCCTCCTAATA
Flanking Amino Acid:
RIATCSGDGFCIIRTIDGKV
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
73.3
0.52
1.1
69.4
45.8
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
57.5
0.23
1.7
68.95
37.6

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036503
69543700 - 69594532
50833
ENSAPLT00000028221
69553518 - 69592141
38624
ENSAPLT00000027501
69544468 - 69594532
50065
ENSAPLT00000006398
69544433 - 69594532
50100