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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69571895_69574324_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69571895 - 69574324
Intron Length:
2430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCTGTTTTATTT
Flanking Amino Acid:
VFGCDWSQNNKDMIATGCED
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
48.6
-0
1.7
61.8
43.8

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036503
69543700 - 69594532
50833
ENSAPLT00000028221
69553518 - 69592141
38624
ENSAPLT00000027501
69544468 - 69594532
50065
ENSAPLT00000006398
69544433 - 69594532
50100