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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69579850_69580237_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69579850 - 69580237
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTGTTTAATT
Flanking Amino Acid:
SMKYWRKLMQRRADQLIQEE
Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
73.9
0.54
1
75.4
38.6
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
70.3
0.72
1.7
85.82
34.8

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036503
69543700 - 69594532
50833
ENSAPLT00000028221
69553518 - 69592141
38624
ENSAPLT00000006398
69544433 - 69594532
50100