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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69579850_69582861_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69579850 - 69582861
Intron Length:
3012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TTTGTTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTGCTGAATT
Flanking Amino Acid:
SMKYWRKLMQRLLQKVSKEL
Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.8
0.76
0.8
78.5
34.7
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
62
0.46
1.9
80.5
41.8

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027501
69544468 - 69594532
50065