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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69581937_69582861_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
69581937 - 69582861
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTGCTGAATT
Flanking Amino Acid:
SDLNNTDDYNELLQKVSKEL
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
72.5
39.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.8
0.76
0.8
78.5
34.7
Minor 5ss
53.8
0.13
2.7
70.1
41.4
Minor BPS
62
0.46
1.9
80.5
41.8

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036503
69543700 - 69594532
50833
ENSAPLT00000028221
69553518 - 69592141
38624
ENSAPLT00000006398
69544433 - 69594532
50100