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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69582962_69584025_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
69582962 - 69584025
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATTG
5'SS Class:
major
3'SS Sequence:
TTCATTGAGCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCCCTTAATG
Flanking Amino Acid:
CCHLAVENIELAMANLIRGN
Intron Amino Acid Position:
976

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.1
72.5
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
52.3
0.05
1.2
52.7
45.3
Minor 5ss
47.1
-0.3
2.9
64.8
46.5
Minor BPS
75.6
0.66
1.3
73.98
38.2

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027501
69544468 - 69594532
50065
ENSAPLT00000006398
69544433 - 69594532
50100
ENSAPLT00000036503
69543700 - 69594532
50833
ENSAPLT00000028221
69553518 - 69592141
38624