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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69588750_69588850_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69588750 - 69588850
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TATTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TATTTTTCAACA
Flanking Amino Acid:
ALPIGIQYVKEQLRGSDWTL
Intron Amino Acid Position:
1114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
81.4
0.71
0.9
78
34.9
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
67.8
0.55
1.4
76.36
34.5

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028221
69553518 - 69592141
38624
ENSAPLT00000027501
69544468 - 69594532
50065
ENSAPLT00000006398
69544433 - 69594532
50100
ENSAPLT00000036503
69543700 - 69594532
50833