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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69588954_69589819_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69588954 - 69589819
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATGATTAATA
Flanking Amino Acid:
TEQLVLHKCSKFRNELLILC
Intron Amino Acid Position:
1148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
75.7
0.58
0.9
69.4
35.8
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
58.4
0.26
2
73.44
38.4

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028221
69553518 - 69592141
38624
ENSAPLT00000027501
69544468 - 69594532
50065
ENSAPLT00000006398
69544433 - 69594532
50100
ENSAPLT00000036503
69543700 - 69594532
50833