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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69589922_69591511_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69589922 - 69591511
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
CTGAACAAAACT
Flanking Amino Acid:
SIVPALYEYTRLDSIFGIHR
Intron Amino Acid Position:
1151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
95.5
1.02
0.5
95.9
14.1
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
44
-0.3
2.1
62.54
46.8

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028221
69553518 - 69592141
38624