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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69592227_69592407_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69592227 - 69592407
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
CTTTTGTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
CTTTTGTTCATA
Flanking Amino Acid:
DAWRACTQLSKPTDELPCTP
Intron Amino Acid Position:
1214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
68.8
36.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
80.2
0.68
0.8
75.8
32.8
Minor 5ss
33.3
-1.9
3.4
40.8
39.8
Minor BPS
47.5
-0.2
2.4
65.77
41.9

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027501
69544468 - 69594532
50065
ENSAPLT00000006398
69544433 - 69594532
50100
ENSAPLT00000036503
69543700 - 69594532
50833