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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69592592_69594412_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69592592 - 69594412
Intron Length:
1821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
TTTTGCTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAACAT
U12 Branch Point Sequence:
TTTTGCTGTACA
Flanking Amino Acid:
ISCLTGLRIQGPVFFLEDGK
Intron Amino Acid Position:
1276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
50.9
0.02
1.1
59
36.1
Major PPT
81.6
0.71
0.9
76.3
37.8
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
54.1
0.12
2.2
76.33
40.5

Associated Gene:

Gene:
WDR17
Ensembl Gene ID:
ENSAPLG00000006133
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036503
69543700 - 69594532
50833
ENSAPLT00000027501
69544468 - 69594532
50065
ENSAPLT00000006398
69544433 - 69594532
50100