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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69601732_69602108_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69601732 - 69602108
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTCCCAAACA
Flanking Amino Acid:
QDIYSLLTNRCIKSLQDREI
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
66.8
40.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.5
0.73
0.7
77.7
24.2
Minor 5ss
28.3
-2.5
2.7
29.4
37.9
Minor BPS
56.9
0.21
2
72.08
39.4

Associated Gene:

Gene:
SPATA4
Ensembl Gene ID:
ENSAPLG00000006032
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006244
69596578 - 69602919
6342