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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69602752_69602830_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69602752 - 69602830
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCCGG
5'SS Class:
major
3'SS Sequence:
GTTGTCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCCAG
U12 Branch Point Sequence:
TTCGTGTTGTCT
Flanking Amino Acid:
DLPACPRHCRRDFSNGYLVA
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
50.8
47.5
Major BPS
38.3
-0.7
1.7
43.9
48.6
Major PPT
70.4
0.46
1
66.1
40.8
Minor 5ss
30.8
-2.2
3.2
38.7
46.4
Minor BPS
36
-1
3.7
65.56
45.8

Associated Gene:

Gene:
SPATA4
Ensembl Gene ID:
ENSAPLG00000006032
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006244
69596578 - 69602919
6342