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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69611338_69630474_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69611338 - 69630474
Intron Length:
19137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTACTCAATA
Flanking Amino Acid:
AEFYGVPQGQGSWADRSPLH
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
74.8
0.56
0.9
69.8
40.4
Minor 5ss
49.2
-0
2.5
66.7
44.7
Minor BPS
62.1
0.38
1.7
73.86
37.6

Associated Gene:

Gene:
ASB5
Ensembl Gene ID:
ENSAPLG00000005751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023987
69605667 - 69633000
27334