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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69643263_69645543_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69643263 - 69645543
Intron Length:
2281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TGTTTTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
PVSIAISRVTLKNVEDFTGP
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
59.1
39.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
79.1
0.65
0.8
78.3
34.8
Minor 5ss
30.5
-2.2
3.2
42.5
44.2
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
SPCS3
Ensembl Gene ID:
ENSAPLG00000005667
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005855
69643120 - 69650380
7261