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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69648261_69649670_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69648261 - 69649670
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTGCATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
TTAACTATAACT
Flanking Amino Acid:
LSAEYSTKNNALNQVVLWDK
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
70.6
0.46
0.9
66.7
39
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
65.4
0.56
1.6
82.9
37.7

Associated Gene:

Gene:
SPCS3
Ensembl Gene ID:
ENSAPLG00000005667
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005855
69643120 - 69650380
7261