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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69741867_69746410_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69741867 - 69746410
Intron Length:
4544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTATTAATG
Flanking Amino Acid:
KGKRFHHQTCSCYRPPCTVR
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82.3
0.73
0.7
81.3
30.6
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
64.1
0.3
1.6
68.96
38.5

Associated Gene:

Gene:
VEGFC
Ensembl Gene ID:
ENSAPLG00000005470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005669
69741333 - 69815197
73865