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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69746742_69747187_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69746742 - 69747187
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAGT
5'SS Class:
major
3'SS Sequence:
GTTGTATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ACTTGTGTAACT
Flanking Amino Acid:
FGFSSHLGDSDTSDGFHICG
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.5
41.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.6
0.67
0.9
70.1
44.9
Minor 5ss
36.2
-1.6
3.1
47.9
43
Minor BPS
49.3
0.03
2.4
73.4
44.1

Associated Gene:

Gene:
VEGFC
Ensembl Gene ID:
ENSAPLG00000005470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005669
69741333 - 69815197
73865