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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69747298_69751111_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69747298 - 69751111
Intron Length:
3814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCATTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTATATTTCATT
Flanking Amino Acid:
IRRSLPATQTQCHMANKTCP
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82
0.72
0.7
77.1
31.4
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
49.7
0.06
1.9
70.32
40.9

Associated Gene:

Gene:
VEGFC
Ensembl Gene ID:
ENSAPLG00000005470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005669
69741333 - 69815197
73865