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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69763407_69764566_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69763407 - 69764566
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGCTGCTTAATA
Flanking Amino Acid:
AAHYNAEILKSIDTEWRKTQ
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.4
0.59
1
73.3
41.5
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
60.3
0.32
1.8
66.18
40.7

Associated Gene:

Gene:
VEGFC
Ensembl Gene ID:
ENSAPLG00000005470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005669
69741333 - 69815197
73865