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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69764781_69815053_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69764781 - 69815053
Intron Length:
50273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
GTTACTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTACTTTGACA
Flanking Amino Acid:
EEEPDAGEPKAHASKDLEDQ
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
67
44.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.9
0.52
1
68.5
42.1
Minor 5ss
31.1
-2.2
3.2
39.3
46.1
Minor BPS
70.8
0.65
1.2
76.01
34.7

Associated Gene:

Gene:
VEGFC
Ensembl Gene ID:
ENSAPLG00000005470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005669
69741333 - 69815197
73865