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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69815462_69816324_F

Intron Information:

Intron Rank:
134202
Intron Class:
major
Intron Phase:
Intron Coordinates:
69815462 - 69816324
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
TACTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TATCTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
83
0.74
0.8
77.3
35.5
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
62.8
0.48
1.6
78.1
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022126
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018900
69815218 - 69844220
29003