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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69819189_69841928_F

Intron Information:

Intron Rank:
134208
Intron Class:
major
Intron Phase:
Intron Coordinates:
69819189 - 69841928
Intron Length:
22740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTGCATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
88.3
0.86
0.7
86.1
27.6
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
62.3
0.46
1.8
81.23
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022126
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039332
69819150 - 69842294
23145