About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69866795_69868840_F

Intron Information:

Intron Rank:
149915
Intron Class:
major
Intron Phase:
Intron Coordinates:
69866795 - 69868840
Intron Length:
2046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TCTTTTTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
82.2
0.72
0.8
73.6
36.6
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
53.7
0.2
1.9
75.28
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030643
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032339
69864243 - 69879517
15275