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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69964141_69968146_R

Intron Information:

Intron Rank:
133413
Intron Class:
major
Intron Phase:
Intron Coordinates:
69964141 - 69968146
Intron Length:
4006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CGGTCTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTTTATAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
68.5
0.42
0.9
61.8
38.8
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
52.5
0.06
1.9
67.66
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019032
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047088
69963244 - 69969644
6401