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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69968274_69969617_R

Intron Information:

Intron Rank:
133414
Intron Class:
major
Intron Phase:
Intron Coordinates:
69968274 - 69969617
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.6
44.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
38
-1.4
3.2
52.2
44.6
Minor BPS
50.3
0.09
1.8
73.1
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019032
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047088
69963244 - 69969644
6401