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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69970501_69972020_F

Intron Information:

Intron Rank:
146232
Intron Class:
major
Intron Phase:
Intron Coordinates:
69970501 - 69972020
Intron Length:
1520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAAGTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92
0.94
0.6
85.2
29.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
51.1
0.11
1.5
62.32
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028790
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039437
69969665 - 69973269
3605