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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_69980924_69985634_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69980924 - 69985634
Intron Length:
4711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTAAGATTAAAT
Flanking Amino Acid:
LFMYFDQKALRIHFGMNGSM
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.3
0.57
1
74.7
33.9
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
48.7
-0
2.1
72.62
43.3

Associated Gene:

Gene:
NEIL3
Ensembl Gene ID:
ENSAPLG00000013305
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013850
69978167 - 70002323
24157
ENSAPLT00000005640
69978167 - 70002323
24157