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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70002450_70005265_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70002450 - 70005265
Intron Length:
2816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTTACT
Flanking Amino Acid:
GCMQHKSLKWELFLKINPRP
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.3
0.73
0.9
76.1
37.8
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
67
0.62
1.6
82.93
38.6

Associated Gene:

Gene:
AGA
Ensembl Gene ID:
ENSAPLG00000013364
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013943
70002399 - 70032549
30151