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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70007144_70020462_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70007144 - 70020462
Intron Length:
13319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
ATATATAAAAAT
Flanking Amino Acid:
VICANTTGSYGKLLFLQPDC
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
43
-0.4
2
62.67
40.8

Associated Gene:

Gene:
AGA
Ensembl Gene ID:
ENSAPLG00000013364
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041560
70006951 - 70032549
25599