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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70022731_70023558_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70022731 - 70023558
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
TTGTTCACTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
STNGGVHKIPGRVGDSPIAG
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.2
77.3
37.8
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
0.9
74.2
35.3
Minor 5ss
36.2
-1.6
2.6
39.6
38.7
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
AGA
Ensembl Gene ID:
ENSAPLG00000013364
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025711
70019551 - 70032549
12999
ENSAPLT00000013943
70002399 - 70032549
30151
ENSAPLT00000041560
70006951 - 70032549
25599