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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70023635_70025687_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70023635 - 70025687
Intron Length:
2053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAACAACC
5'SS Class:
major
3'SS Sequence:
TTGAAAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCTGAGTG
Flanking Amino Acid:
QRNVHNHDTIGMVVIGGNGT
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
65.2
39
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
64.9
0.34
1
60.5
44.5
Minor 5ss
40.4
-1.1
2.9
50.8
39.7
Minor BPS
51.6
-0
1.7
60.73
41.4

Associated Gene:

Gene:
AGA
Ensembl Gene ID:
ENSAPLG00000013364
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041560
70006951 - 70032549
25599
ENSAPLT00000025711
70019551 - 70032549
12999
ENSAPLT00000013943
70002399 - 70032549
30151