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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70025800_70026682_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70025800 - 70026682
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
CATATAATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATGCATATAATT
Flanking Amino Acid:
NQSCQPNYWKNVVPDSSKSC
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
71
0.47
1
62.6
41.8
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
48
-0
1.7
65.79
38.8

Associated Gene:

Gene:
AGA
Ensembl Gene ID:
ENSAPLG00000013364
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041560
70006951 - 70032549
25599
ENSAPLT00000025711
70019551 - 70032549
12999
ENSAPLT00000013943
70002399 - 70032549
30151