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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70026796_70028699_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70026796 - 70028699
Intron Length:
1904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTTTTCAAAG
Flanking Amino Acid:
TKHTLLVGESASLFAVRMGF
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.8
0.45
1.1
70.4
39.2
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
52.4
-0
1.7
60.15
42

Associated Gene:

Gene:
AGA
Ensembl Gene ID:
ENSAPLG00000013364
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013943
70002399 - 70032549
30151
ENSAPLT00000041560
70006951 - 70032549
25599
ENSAPLT00000025711
70019551 - 70032549
12999